CRAN: https://CRAN.R-project.org/package=haploR
There exists a set of web-based tools for integration and exploring information linked to annotated genetic variants. We developed haploR, an R-package for querying such web-based genome annotation tools (currently implementing on HaploReg and RegulomeDB) and gathering information in a format suitable for downstream bioinformatic analyses. This will facilitate post-genome wide association studies streamline analysis for rapid discovery and interpretation of genetic associations.
References:
- Zhbannikov I.Y. et al. (2017) haploR: an R-package for querying web-based annotation tools. F1000Research, 6:97. [ doi:10.12688/f1000research.10742.2 ] [ PMID: 28620455 ] [ PMCID: PMC5461892 ]
