Robert Moseley and Sophia Campione recently developed a browser-based tool that allows for interactive visualization and generation of network models. The Inherent Dynamics Visualizer (IDV) connects to the network inference tool developed with our collaborators the Inherent Dynamics Pipeline (IDP). The IDV allows for informed decision-making on parameter choices made throughout the IDP. Together, the tools allow for streamlined inference of gene-regulatory networks.
See the papers for the IDV and the IDP. Watch the video for the IDV here:
Inherent Dynamics Visualizer, an Interactive Application for Evaluating and Visualizing Outputs from a Gene Regulatory Network Inference Pipeline