Came up with a paper on BMC genoics comparing five different somatic snp callers.
GATK UnifiedGenotyper in NaiveSubtract MuTect1 SomaticSniper from the original paper Installation help document for Strelka and the original paper on Bioinformatics VarScan2 from the original paper Classical samtools method also works.
Calling variants with samtools/bcftools
Help from samtools protocol Help from samtools/bcftools protocol
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