The Structural Biology Lab at Duke DHVI

Author: Rasangi Kankanam Pathirage, Ph.D.

New Preprint Available: Advancing Structural Virology with 100 keV TEM

We are pleased to announce that our manuscript, “An integrated workflow for structural virology with a 100 keV electron microscope,” is now available on bioRxiv:

In this work, we present a complete and practical workflow for applying cryo-electron microscopy (cryo-EM) to structural virology using a 100 keV electron microscope – an instrument that can be easily integrated into a biochemistry laboratory and provides significantly greater accessibility than the high-end 200 keV and 300 keV systems traditionally required. The manuscript details optimized strategies for sample preparation, data acquisition, and image processing, demonstrating that high-quality structural information on viral specimens can be obtained with lower-voltage microscopes.

As owners of an in-house 100 keV Tundra microscope (Thermo Fisher Scientific), our lab has been able to rapidly iterate on sample optimization and data collection without relying on external facilities. This direct access has enabled efficient troubleshooting, streamlined workflows, and consistent data quality, allowing us to obtain high-resolution structures. Our experience highlights the practical advantages of local, lower-voltage cryo-EM for day-to-day structural virology research.

We have successfully determined structures of several important viral glycoproteins, including coronavirus spike proteins, HIV envelope trimers, and Henipavirus fusion (F) proteins, all using a 100 keV microscope. Beyond single-particle analysis, the 100 keV platform also enabled detailed visualization of supramolecular assemblies such as nanoparticles, liposomes, virus-like particles (VLPs), and intact viruses. These results underscore the versatility of lower-voltage cryo-EM for both high-resolution protein structure determination and the structural characterization of complex, heterogeneous biological assemblies.

Group Photo Day !

With all 23 members of the Acharya Lab present today, we couldn’t miss the chance to capture the moment. Group Photo Day was officially a success! 

There were laughs, mild confusion over where to stand, and at least one person blinking in every shot, but we got the photos!

Here’s to a full house, great science, and a team that keeps growing in size and spirit.

Acharya Lab at the 9th Annual Duke Surgery Research Day

Ruth, Ellie, and Aaron represented the Acharya Lab at the 9th Annual Duke Department of Surgery Research Day on April 30th, 2025. A great day of sharing posters, connecting with fellow researchers, and celebrating all the exciting work happening across Duke!

Sunny skies, science vibes! BPS 2025

The Acharya Lab headed to sunny Los Angeles for the Biophysical Society Annual Meeting 2025, held February 15–19.

Bhishem, Murali, Ellie, Aaron and Alex actively participated, sharing our work through both verbal presentations and poster sessions. Murali also co-chaired the “Protein Structure and Conformation” session, contributing to some engaging discussions on the latest in structural biophysics. It was a great opportunity to connect with fellow scientists, exchange ideas, and showcase what our team has been up to.

A big thank you to the Biophysical Society for hosting such a fantastic meeting combining excellent science with a bit of West Coast sunshine made it all the better!

Looking forward to what’s next!

Happy New Year from all of us at the Acharya Lab!

The Acharya Lab is starting the new year with big ideas, fresh energy, and probably way too many snacks in the break room already! Cheers to a year full of good vibes, great teamwork, cool experiments, strong coffee, and even stronger science!

Acharya Lab at the DHVI Holiday Party 2024

The Acharya Lab joined in the festive fun at the DHVI Holiday Party 2024 and we had a blast! This year’s highlight? Our team “The Pro-peptides”  led by Victor and joined by Xiao, Rasangi, Ujjwal, and visiting trainee Emma (from Dr. Amith Sharma’s lab), won the DHVI Reindeer Games for the second year in a row!

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