Publications

2022

  • Alkan C, Carbone L, Dennis M, Ernst J, Evrony G, Girirajan S, Leung DCY, Cheng CCY, MacAlpine D, Ting N, Ramsay M, Rowe H, Gould P, Enriquez-Gasca R, Sullivan B,  (2022) Perspective: Implications of the first complete human genome assembly. Genome Res, 32: 595-598, doi:10.1101/gr.276723.122. 
  • Altemose N, Logsdon GA, Bzikadze AV, Sidhwani S, Langley SA, Caldas GV, Hoyt SJ, Uralsky L, Ryabov FD, Shew CJ, Sauria MEG, Borchers M, Gershman A, Mikheenko A, Shepelev VA, Dvorkina T, Kunyavskaya O, Vollger MR, Rhie A, McCartney AM, Asri M, Lorig-Roach R, Shafin K, Aganezov S, Olson D, de Lima LG, Potapova T, Hartley GA, Haukness M, Kerpedjiev P, Gusev F, Tigyi K, Brooks, S, Young A, Nurk S, Koren S, Salama SR, Paten B, Rogaev EI, Streets A, Karpen GH, Dernburg AF, Sullivan BA, Straight AF, Wheeler TJ, Gertson JL, Eichler EE, Phillippy AM, Timp W, Dennis MY, O’Neill RJ, Zook JM, Schatz MC, Pevzner PA, Diekhans M, Langley CH, Alexandrov IA, Miga KH (2022) Complete genomic and epigenetic maps of human centromeres. Science, 376(6588):eabl4178, doi: 10.1126/science.abl4178.
  • Nurk S, Koren S, Rhie A, Rautiainen M, Bzikadze AV, Mikheenko A, Vollger MR, Altemose N, Uralsky L, Gershman A, Aganezov S, Hoyt SJ, Diekhans M, Logsdon GA, Alonge M, Antonarakis SE, Borchers M, Bouffard GG, Brooks SY, Caldas GV, Cheng H, Chin C-S, Chose W, de Lima LG, Dishuck PC, Durbin R, Dvorkina T, Fiddes IT, Formenti G, Fulton RS, Fungtammasan A, Garrison E, Grady PGS, Graves-Lindsay TA, Hall IM, Hansen NF, Hartley GA, Haukness M, Howe K, Hunkapiller MW, Jain C, Jain M, Jarvis ED, Kerpedjiev P, Kirsche M, Kolmogorov M, Korlach J, Kremitzki M, Li H, Maduro VV, Marschall T, McCartney AM, McDaniel J, Miller DE, Mullikin JC, Myers EW, Olson ND, Paten B, Peluso P, Pevzner PA, Porubsky D, Potapova T, Rogaev EI, Rosenfeld JA, Salzberg SL, Schneider VA, Sedlazeck FJ, Shafin K, Shew CJ, Shumate A, Sims Y, Smit AFA, Soto DC, Sovic I, Storer JM, Streets A, Sullivan BA, Thibaud-Nissen F, Torrance J, Wagner J, Walenz BP, Wenger A, Wood JMD, Xiao C, Yan SM, Young AC, Zarate S, Surti V, McCoy RC, Dennis MY, Alexandrov IA, Gerton JL, O’Neill RJ, Timp W, Zook JM, Schatz MC, Eichler EE, Miga KH, Phillippy AM (2022) The complete sequence of a human genome. Science, 376(6588): 44-53.

2021

2020

2019

2018

2017

2016

2015

  • Ross JE*, McNulty SM*, Sullivan BA (2015) The epigenetics of centromere function. in “Epigenetics: Current Research and Emerging Trends” (BP Chadwick, editor), pp. 133-166, Caister Academic Press. (*joint first authors)

2014

dcell.11
Cover Art by B. Sullivan, 2006

2013

  • Earnshaw WC, Allshire RC, Black BE, Bloom K, Brinkley BR, Brown W, Cheeseman IM, Choo KHA, Copenhaver GP, DeLuca JG, Desai A, Diekmann S, Erhardt S, Fitzgerald-Hayes M, Foltz, D, Fukagawa T, Gassmann R, Gerlich DW, Glover DM, Gorbsky GJ, Harrison SC, Heun P, Hirota T, Jansen LET, Karpen G, Kops GJPL, Lampson MA, Lens SM, Losada A, Luger K, Maiato H, Maddox PS, Margolis RL, Masumoto H, McAinsh AD, Mellone BG, Meraldi P, Musacchio A, Oegema K, O’Neill RJ, Salmon ED, Scott KC, Straight AF, Stukenberg PT, Sullivan BA, Sullivan KF, Sunkel CE, Swedlow JR, Walczak CE, Warburton PE, Westermann S, Willard HF, Wordem L, Yanagida M, Yen TJ, Yoda K, Cleveland DW (2013) Esperanto for histones: CENP-A, not CenH3, is the centromeric histone H3 variantChromosome Res 21:101–106, doi: 10.1007/s10577-013-9347-y, PMCID: PMC3627038.

2012

2011

2010

2009

  • Balakumaran BS, Porrello A, Hsu DS, Glover W, Foye A, Leung JY, Sullivan BA, Hahn WC, Loda M, Febbo PG. (2009) MYC Activity Mitigates Response to Rapamycin in Prostate Cancer through Eukaryotic Initiation Factor 4E-Binding Protein 1-Mediated Inhibition of Autophagy. Cancer Res 69(19):7803-10.
  • Mravinac B, Sullivan LL, Reeves JW, Yan CM, Kopf KS, Farr CJ, Schueler MG, Sullivan BA. (2009) Histone modifications within the human X centromere regionPLoS ONE 4(8):e6602, PMCID: PMC2719913.
  • Gopalakrishnan S, Sullivan BA, Trazzi S, Della Valle G, Robertson KD. (2009) DNMT3B interacts with constitutive centromere protein CENP-C to modulate DNA methylation and the histone code at centromeric regions. Human Mol Genet 18:3178–3193, PMCID: PMC2722982.
  • Kim JH, Ebersole T, Kouprina N, Noskov VN, Ohzeki J, Masumoto H, Mravinac B, Sullivan BA, Pavlicek A, Dovat S, Pack SD, Kwon YW, Flanagan PT, Loukinov D, Lobanenkov V, Larionov V. (2009) Human gamma-satellite DNA maintains open chromatin structure and protects a transgene from epigenetic silencingGenome Res 19(4):533-44, PMCID: PMC2665773.
  • Gao F, Ponte JF, Levy M, Papageorgis P, Cook NM, Ozturk S, Lambert AW, Thiagalingam A, Abdolmaleky HM, Sullivan BA, Thiagalingam S. (2009) hBub1 negatively regulates p53 mediated early cell death upon mitotic checkpoint activation. Cancer Biol Ther 8(7):55-63.

2006

2005

  • Scott KC, Sullivan BA. (2005) Epigenetic Inheritance and RNAi at the centromere and heterochromatin. In Encyclopedia of Genetics, Genomics, Proteomics and Bioinformatics, (Section editor: R. Nicholls), Edited by Lynn Jorde (John Wiley & Sons), doi: 10.1002/04701153X.g103322.
  • Wilson KC, Cattel DJ, Wan Z, Rahangdale S, Ren F, Kornfeld H, Sullivan BA, Cruikshank WW, Center DM. (2005) Regulation of prointerleukin-16 and p27Kip1 in primary human T lymphocytes, Cell Immunol 237:17-27.
  • Lam AL, Pazin DE, Sullivan BA. (2005) Control of gene expression and assembly of chromosomal subdomains by chromatin regulators with antagonistic functions. Chromosoma 114:242-51.
dev_cell_cover
Cover Art by B. Sullivan, 2005

2004

2002

2001

  • Sullivan BA, Blower MD, Karpen GH. (2001) Determining centromere identity: cyclical stories and forking paths. Nat Rev Genet 2:584-596.
  • Sullivan B, Karpen G. (2001) Centromere identity in Drosophila is not determined in vivo by replication timingJ Cell Biol 154:683-690.
  • Gong Y, RB Slee et al. (2001) LDL Receptor-Related Protein 5 (LRP5) affects bone accrual and eye development. Cell 107:513–523.

2000

  • Sullivan BA, Bickmore WA. (2000) Unusual chromosome architecture and behaviour at an HSR. Chromosoma 109:173-180.

1999

  • Sullivan BA & PE Warburton (1999) Studying the progression of vertebrate chromosomes through mitosis by immunofluorescence and FISH. In Chromosome Structural Analysis: A Practical Approach, p 81-101, Edited by Dr. Wendy Bickmore (IRL Press).

1998

  • Sullivan BA & HF Willard (1998) Stable dicentric X chromosomes with two functional centromeres. Nat Genet 20:227-228.

1997

1996

HMG cover
Cover Art by B. Sullivan, 1995

1995

  • Sullivan BA, CA Schiffer, SR Patil, D Hulseberg, J Leana-Cox, & S Schwartz (1995) Application of FISH to rearrangements associated with chronic myelogenous leukemia. Cancer Genet Cytogenet 82:93-99.
  • Sullivan BA & S Schwartz (1995) Identification of centromeric antigens in dicentric Robertsonian translocations: CENP-C and CENP-E are essential components of functional centromeres. Hum Mol Genet 4:2189-2198 (+ cover illustration).

1994

  • Sullivan BA, DJ Wolff, and S Schwartz (1994) Analysis of centromeric activity in dicentric Robertsonian translocations: Implications for a functional acrocentric hierarchy. Chromosoma 103:459-467.

1993

  • Leana-Cox J, S Levin, R Surana, E Wulfsberg, CL Keene, LJ Raffel, B Sullivan, and S Schwartz (1993) Characterization of de novo duplications in eight patients by using fluorescence in situ hybridization with chromosome-specific DNA libraries. Amer J Hum Genet 52:1067-1073.
  • Sullivan BA, Leana-Cox J, and S Schwartz (1993) Clarification of subtle reciprocal rearrangements using fluorescence in situ hybridization. Amer J Med Genet 47:223-230.