Site maintenance 6PM EDT 10/24 to 6AM EDT 10/25

Emergency maintenance to be performed by Duke OIT may affect the availability of MorphoSource from 6PM US eastern time today (10/24/2022) until 6AM US eastern time tomorrow (10/25/2022). This maintenance will affect MorphoSource’s data storage layer, which means that media download and upload may be unavailable for short periods during this time. Thank you for your understanding.

MorphoSource awarded 5-year sustainability funding by the US National Science Foundation

We are happy and grateful to announce that the US National Science Foundation has awarded MorphoSource sustainability funding (DBI-2149257) to achieve a number of goals over the next five years that will enable us to better serve our diverse user communities, move towards more independent long term sustainability, and support exciting and revolutionary new scholarship in anatomy and many other fields. 

From our public award abstract:

An award to Duke University is made in support of the MorphoSource on-line data resource for 3D specimen data. MorphoSource is a web accessible data repository that is uniquely specialized for 3D/2D image data representing physical specimens from museum or lab collections. Sources of 3D data include CT scanners (a common source of 3D imagery), laser scanners, photogrammetry modeling and more. Over the last decade, MorphoSource has initiated a revolution in the study of anatomy through unprecedented data access. In addition to providing digital data and tools for scientists to conduct research, MorphoSource also supports public engagement and is being widely used for public education and outreach. By making 3D data discoverable and accessible, MorphoSource helps neutralize access limitations due to geography, capability of travel, fragility of material, or high demand. By making web accessible 3D imagery available to any student with a basic computer or mobile device, MorphoSource broadens inclusivity in use of biodiversity and natural history museum collections in a way that was never previously possible.

In 2013, MorphoSource.org was created to enable broad access to digitized “virtual specimens” and 3D data for advanced analyses of anatomic phenotypes. MorphoSource has since become a vital research resource for 3D data on anatomical form of specimens in biodiversity and natural history collections. MorphoSource has been cited by ~1,100 papers for data access or archiving and served a growing, active community of 15,000 users (with ~1,600 data contributors). Achieving this status has hinged largely on its standards-based data model, file format expertise, rich management tools, and collaboratively developed policies. Furthermore, MorphoSource supports deep integrations with a variety of federally-funded bioinformatic platforms and is a natural and robust partner in national efforts at digitization of biodiversity collections for handling 3D needs. With unprecedented depth of taxonomic sampling and a powerful 3D web viewer, Morphosource has already enabled start-to-finish studies of large-scale patterns in anatomical variation from “virtual specimens” for the first time. The ability to access and measure nuanced anatomical variation in massive numbers of specimens is essential to realizing NSF’s visionary goals of leveraging computer science frontiers like machine learning, computer vision and artificial intelligence in biological research. This NSF award will allow MorphoSource to continue serving its diverse communities as they grow for the next five years and to further develop policies and procedures that will eventually empower certain segments of user communities to help support the platform. Results from studies that leverage MorphoSource are frequently published in peer-reviewed scientific journals and presented at scientific meetings and in numerous outreach and training presentations.

This award reflects NSF’s statutory mission and has been deemed worthy of support through evaluation using the Foundation’s intellectual merit and broader impacts review criteria.

MorphoSource referenced in 400 citations in 2021, increasing all-time total to nearly 1300

According to Google Scholar, MorphoSource was discussed or referenced 400+ times across the year 2021. This is a new yearly record for the repository, and increases our all-time number of citations to almost 1,300. Thank you very much to all of the data contributors and downloaders who have made this happen by finding MorphoSource a useful resource for their research and other scholarly efforts!

MorphoSource Team at Reduced Capacity for End of Year Holidays, Dec. 20-31

The MorphoSource team will be operating at reduced capacity over the upcoming end of year holiday period, from Monday, December 20th through Friday, December 31.

MorphoSource Team at Reduced Capacity for US Holiday Weekend, Nov. 25-28

The MorphoSource team will be operating at reduced capacity over the upcoming US holiday weekend, from Thursday, November 25th through Sunday, November 28th.

Update: Daily Server Restart at 4AM US eastern time

For the foreseeable future, we will be running a schedule where the MorphoSource server will restart for very brief maintenance at 4AM US eastern time daily. This should not pose an issue to normal site usage. If you experience a download interruption related to this, remember that downloads can be resumed with no loss of progress due to interruption. If you are a data contributor uploading very large data files that take more than 24 continuous hours to upload, you could also consider taking advantage of our cloud upload features, where you can upload files directly from Box, Dropbox, or Google Drive.

New Feature: Resumable Downloads!

Downloads of media from MorphoSource are now resumable! If you experience a network interruption while downloading media, you can resume your download using most major browsers like Chrome (which we tend to recommend users use with MorphoSource). Additionally, you can use a third-party download manager to improve download stability even further.

New Feature: News and Updates Section on Front Page

In an effort to better communicate with our user community, we have added a feature to the MorphoSource front page where you will see a list of recent updates from the admin team. These may introduce new features to the repository, share important information relating to server downtime, or notify users of tutorial or educational resources.