Software

SQUAC: An efficient and robust large-scale multiple testing method to infer high-dimensional gene co-expression networks based on sample-quantile contingency tables.

[paper][R codes]

bcSeq: A highly efficient data structure and algorithm for performing alignment of short reads from CRISPR or shRNA screens to reference barcode library.

[paper][R package]

capme: An efficient algorithm to estimate covariate-adjusted precision matrices.

[paper][R package]

qlspack: Fitting mixed effect model based on quasi-least-square.

[paper][R package]