Publications

Methodology Papers

Pura J, Chan C, and Xie J. (2019) Multiple Testing Embedded in an Aggregation Tree to Identify where Two Distributions Differ. Technical Report

Xie, J, and Li, R. (2018) False discovery rate control for high dimensional networks of quantile associations conditioning on covariates. Journal of the Royal Statistical Society: Series B (Statistical Methodology)  80(5): 1015-1034.

Lin, J, Gresham, J, Wang, T, Kim, SY, Alvarez, J, Damrauer, JS, Floyd, S, Granek, J, Allen, A, Chan, C, Xie, J, and Owzar, K. (2018) bcSeq: An R Package for Fast Sequence Mapping in High-throughput shRNA and CRISPR Screens. Bioinformatics 15;34(20):3581-3583.

Xie, J, and Kang, J. (2017) High-dimensional tests for functional networks of brain anatomic regions. Journal of Multivariate Analysis 156 (April 2017): 70-88.

Cai, TT, Li, H, Liu, W, and Xie, J. (2016) Joint Estimation of Multiple High-dimensional Precision Matrices. Statistica Sinica 26, no. 2: 445-464

Ha, MJ, Sun, W, and Xie, J. (2016) PenPC: A two-step approach to estimate the skeletons of high-dimensional directed acyclic graphs. Biometrics 72, no. 1: 146-155.

Cai, TT, Li, H, Liu, W, and Xie, J. (2013) Covariate-adjusted precision matrix estimation with an application in genetical genomics. Biometrika 100(1): 139-156.

Daye, ZJ, Xie, J, and Li, H. (2011) A Sparse structured shrinkage estimator for nonparametric varying-coefficient model with an application in genomics. Journal of Computational and Graphical Statistics 21(1): 110-133.

Xie, J, Cai, TT, and Li, H. (2011) Sample size and power analysis for sparse signal recovery in genome-wide association studies. Biometrika 98, no. 2: 273-290.

Chen, J, Xie, J, and Li, H. (2011) A penalized likelihood approach for bivariate conditional normal models for dynamic co-expression analysis. Biometrics 67, no. 1: 299-308.

Xie, J, Cai, TT, Maris, J, and Li, H. (2011) Optimal False Discovery Rate Control for Dependent Data. Statistics and its interface 4, no. 4: 417-430. [Xie, J, Cai, TT, and Li, H. (2016) Correction to the paper “Optimal false discovery rate control for dependent data”. Statistics and its Interface 9, no. 1: 33-35.]

Cotch, MF, Peet, J, Shults, J, Stambolian, D, and Xie, J. (2010) Quasi-least squares with mixed linear correlation structures. Statistics and Its Interface 3, no. 2: 223-233.

 

Collaboration Papers

Wang, X; Liu, H; Xu, Y; Xie, J; Zhu, D; Amos, CI; Fang, S; Lee, JE; Li, X; Nan, H; Song, Y; and Wei, Q. Genetic variants in the calcium signaling pathway genes are associated with cutaneous melanoma-specific survival. Carcinogenesis. 2019 Apr 29;40(2):279–88.

Elsamadicy, AA; Ren, X; Kemeny, H; Charalambous, L; Sergesketter, AR; Rahimpour, S; Williamson, T; Goodwin, CR; Abd-El-Barr, MM; Gottfried, ON; Xie, J; and Lad, SP. Independent Associations With 30- and 90-Day Unplanned Readmissions After Elective Lumbar Spine Surgery: A National Trend Analysis of 144,123 Patients. Neurosurgery. 2019 Mar 1;84(3):758–67.

Xu, Y, Liu, H, Liu, S, Wang, Y, Xie, J, Stinchcombe, TE, Su, L, Zhang, R, Christiani, DC, Li, W, and Wei, Q. Genetic variant of IRAK2 in the toll-like receptor signaling pathway and survival of non-small cell lung cancer. Int J Cancer 143, no. 10 (November 15, 2018): 2400–2408.

Zeng, Y; Nie, C; Min, J; Chen, H; Liu, X; Ye, R; Chen, Z; Bai, C; Xie, E; Yin, Z; Lv, Y; Lu, J; Li, J; Ni, T; Bolund, L; Land, KC; Yashin, A; O’Rand, AM; Sun, L; Yang, Z; Tao, W; Gurinovich, A; Franceschi, C; Xie, J; Gu, J; Hou, Y; Liu, X; Xu, X; Robine, J-M; Deelen, J; Sebastiani, P; Slagboom, E; Perls, T; Hauser, E; Gottschalk, W; Tan, Q; Christensen, K; Shi, X; Lutz, M; Tian, X-L; Yang, H; and Vaupel, J. Sex Differences in Genetic Associations With Longevity. JAMA Netw Open. 2018 Aug;1(4).

Xu, Y, Liu, H, Liu, S, Wang, Y, Xie, J, Stinchcombe, TE, Su, L, Zhang, R, Christiani, DC, Li, W, and Wei, Q. Genetic variant of IRAK2 in the toll-like receptor signaling pathway and survival of non-small cell lung cancer. International Journal of Cancer (July 6, 2018).

Elsamadicy, AA, Yang, S, Sergesketter, AR, Ashraf, B, Charalambous, L, Kemeny, H, Ejikeme, T, Ren, X, Pagadala, P, Parente, B, Xie, J, and Lad, SP. Prevalence and Cost Analysis of Complex Regional Pain Syndrome (CRPS): A Role for Neuromodulation. Neuromodulation: Journal of the International Neuromodulation Society 21, no. 5 (July 2018): 423-430. (Review)

Elsamadicy, AA, Ren, X, Kemeny, H, Charalambous, L, Sergesketter, AR, Rahimpour, S, Williamson, T, Goodwin, CR, Abd-El-Barr, MM, Gottfried, ON, Xie, J, and Lad, SP. Independent Associations With 30- and 90-Day Unplanned Readmissions After Elective Lumbar Spine Surgery: A National Trend Analysis of 144 123 Patients. Neurosurgery (June 11, 2018).

Lad, SP, Yang, S, Xie, J, Farjat, A, Pagadala, P, and Parente, B. Down the Rabbit Hole: Specialty Influence on SCS Outcomes. Neuromodulation: Journal of the International Neuromodulation Society 21, no. 4 (June 2018): 417-420. (Letter)

Duan, B, Hu, J, Liu, H, Wang, Y, Li, H, Liu, S, Xie, J, Owzar, K, Abbruzzese, J, Hurwitz, H, Gao, H, and Wei, Q. Genetic Variants in the Platelet-Derived Growth Factor Subunit B Gene Associated with Pancreatic Cancer Risk. International journal of cancer 142-7 (April, 2018): 1322-1331.

Feng, Y, Wang, Y, Liu, H, Liu, Z, Mills, C, Owzar, K, Xie, J, Han, Y, Qian, DC, Hung Rj, RJ, Brhane, Y, McLaughlin, J, Brennan, P, Bickeböller, H, Rosenberger, A, Houlston, RS, Caporaso, N, Landi, MT, Brüske, I, Risch, A, Ye, Y, Wu, X, Christiani, DC, Amos, CI, and Wei, Q. Novel genetic variants in the P38MAPK pathway gene ZAK and susceptibility to lung cancer. Molecular carcinogenesis, 2018 Feb;57(2):216–24.

Elsamadicy, AA, Sergesketter, A, Ren, X, Mohammed Qasim Hussaini, S, Laarakker, A, Rahimpour, S, Ejikeme, T, Yang, S, Pagadala, P, Parente, B, Xie, J, and Lad, SP. Drivers and Risk Factors of Unplanned 30-Day Readmission Following Spinal Cord Stimulator Implantation. Neuromodulation : journal of the International Neuromodulation Society (September 29, 2017).

Elsamadicy, AA, Yang, S, Sergesketter, AR, Ashraf, B, Charalambous, L, Kemeny, H, Ejikeme, T, Ren, X, Pagadala, P, Parente, B, Xie, J, and Lad, SP. Prevalence and Cost Analysis of Complex Regional Pain Syndrome (CRPS): A Role for Neuromodulation. Neuromodulation: journal of the International Neuromodulation Society, 21-1 (January 2018): 87-92.

Charalambous, LT, Premji, A, Tybout, C, Hunt, A, Cutshaw, D, Elsamadicy, AA, Yang, S, Xie, J, Giamberardino, C, Pagadala, P, Perfect, JR, and Lad, SP. Prevalence, healthcare resource utilization and overall burden of fungal meningitis in the United States. Journal of medical microbiology, 67-2 (December 15, 2017): 215-227.

Farber, SH, Han, JL, Elsamadicy, AA, Hussaini, Q, Yang, S, Pagadala, P, Parente, B, Xie, J, and Lad, SP. Long-term Cost Utility of Spinal Cord Stimulation in Patients with Failed Back Surgery Syndrome. Pain physician 20, no. 6 (September 2017): E797-E805.

Farber, SH, Han, JL, Petraglia Iii, FW, Gramer, R, Yang, S, Pagadala, P, Parente, B, Xie, J, Petrella, JR, and Lad, SP. Increasing Rates of Imaging in Failed Back Surgery Syndrome Patients: Implications for Spinal Cord Stimulation. Pain physician 20, no. 6 (September 2017): E969-E977.

Elsamadicy, AA, Farber, SH, Yang, S, Hussaini, SMQ, Murphy, KR, Sergesketter, A, Suryadevara, CM, Pagadala, P, Parente, B,Xie, J, and Lad, SP. Impact of Insurance Provider on Overall Costs in Failed Back Surgery Syndrome: A Cost Study of 122,827 Patients. Neuromodulation: Journal of the International Neuromodulation Society20, no. 4 (June 2017): 354-360.

Han, JL, Murphy, KR, Hussaini, SMQ, Yang, S, Parente, B, Xie, J, Pagadala, P, and Lad, SP. Explantation Rates and Healthcare Resource Utilization in Spinal Cord Stimulation. Neuromodulation: Journal of the International Neuromodulation Society20, no. 4 (June 2017): 331-339.

Hussaini, SMQ, Murphy, KR, Han, JL, Elsamadicy, AA, Yang, S, Premji, A, Parente, B, Xie, J, Pagadala, P, and Lad, SP. Specialty-Based Variations in Spinal Cord Stimulation Success Rates for Treatment of Chronic Pain.Neuromodulation: Journal of the International Neuromodulation Society20, no. 4 (June 2017): 340-347.

Murphy, KR, Han, JL, Hussaini, SMQ, Yang, S, Parente, B, Xie, J, and Lad, SP. The Volume-Outcome Effect: Impact on Trial-to-Permanent Conversion Rates in Spinal Cord Stimulation. Neuromodulation: Journal of the International Neuromodulation Society 20, no. 3 (April 2017): 256-262.

Farber, SH, Murphy, KR, Suryadevara, CM, Babu, R, Yang, S, Feng, L, Xie, J, Perfect, JR, and Lad, SP. Comparing outcomes of early, late, and non-surgical management of intraspinal abscess. Journal of clinical neuroscience: Official Journal of the Neurosurgical Society of Australasia 36 (February 2017): 64-71.

Murphy, KR, Han, JL, Yang, S, Hussaini, SMQ, Elsamadicy, AA, Parente, B, Xie, J, Pagadala, P, and Lad, SP. Prevalence of Specific Types of Pain Diagnoses in a Sample of United States AdultsPain physician 20, no. 2 (February 2017): E257-E268.

Krucoff, MO, Cook, S, Adogwa, O, Moreno, J, Yang, S, Xie, J, Firempong, AO, Lad, N, and Bagley, CA. Racial, Socioeconomic, and Gender Disparities in the Presentation, Treatment, and Outcomes of Adult Chiari I Malformations. World neurosurgery 97 (January 2017): 431-437.

Farber, SH, Hatef, J, Han, JL, Marky, AH, Xie, J, Huang, K, Verla, T, Lokhnygina, Y, Collins, TA, and Lad, SP. Implantable neurostimulation for headache disorders: effect on healthcare utilization and expenditures. Neuromodulation: Journal of the International Neuromodulation Society19, no. 3 (April 2016): 319-328.

Napoli, A, Xie, J, and Obeid, I. Understanding the temporal evolution of neuronal connectivity in cultured networks using statistical analysis. BMC neuroscience15 (January 21, 2014): 17.