Immune homeostasis
  • 1000 Patient Project. Development of semi-supervised pipeline for integrating manual and automated flow cytometry analysis. (Collaboration between Immune Informatics group and Dr. Shelley Hwaang)
  • 1000 Patient Project. Development of novel methods for evaluation of statistically significant variables in gating and lineage tree data from flow cytometry data. (Collaboration between Statistical Immunology group and Dr. Shelley Hwaang)
Transplantation
  • Lung transplantation. Develop pilot study grant proposal for the identification of humoral immune measurements that correlate with lung transplant outcome. (Collaboration with Dr. Scott Palmer)
  • Lung transplantation. Perform analysis of immune correlates predicting anti-HLA antibodies in lung transplant. (Collaboration between Statistical Immunology group and Dr. Laurie Snyder)
Infectious disease and vaccine development
  • Modeling of viral kinetics and the interplay with host immunity during acute infection (Collaboration between Mathematical Immunology and Dr. Georgia Tomaras)
  • Modeling of P01 CMV transmission dynamics. (Collaboration between Mathematical Immunology and Dr. Sallie Permar)
  • Modeling of P01 HIV rebound dynamics. (Collaboration between Mathematical Immunology and Dr. Sallie Permar)
  • Pipeline development and analysis of bulk RNA-seq data following nasal challenge with vaccine and mast cell adjuvant (Collaboration between Immune Informatics and Dr. Herman Staats)
Cancer immunology
  • Partitioning, segmenting and statistical analysis of the IHC immune landscape in primary and secondary colorectal cancer (Collaboration between Immune Informatics/Statistical Immunology and Dr. Andy Nixon)
  • Identificaiton of study samples that could be used to identify predictive biomarkers of patient outcomes in cancer. (Collaboration between Statistical Immunology and Dr. Mustafa Khasraw)
Autoimmunity and allergy
  • Analysis of immune correlates of myasthenia gravis. (Collaboration between Statistical Immunology and Dr. Jeff Gupthill)