Monthly Archives: May 2010

An online book provides very good overview about subversion Subversion is a powerful tool to manage computer code, in a sense that it keeps track of any update in the code and also provides the ability to rollback. Here is … Continue reading →

Bioinformatics group meeting feedback/update General comments: 1. Try to minimize the dependency on the file and/or run folder structure. Rather focusing on raw sequence file (e.g. fastq) or srf 2. Try to leverage third-party tool, FASTX-toolkit. (Thanks to Derek who … Continue reading →

In an attempt to implement out internal/external qc procedure for next generation sequencing project, I took the first step, which is parsing the Summary.xml format (normally provided by Hemant’s group, i.e. /datastore/nextgenin/htsf/SE_091222_UNC1-RDR301647_0004/Summary.xml). 1. I try to load this Summary.xml into … Continue reading →

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